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https://github.com/JuliaFEM/JuliaFEM.jl.git
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c04e84785d
ext/JuliaFEMMPIExt.jl | 156 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 156 insertions(+)
157 lines
5.2 KiB
Julia
157 lines
5.2 KiB
Julia
# This file is a part of JuliaFEM.
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# License is MIT: see https://github.com/JuliaFEM/JuliaFEM.jl/blob/master/LICENSE.md
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module JuliaFEMMPIExt
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using JuliaFEM
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using MPI
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@inline function _matvec_halo_mpi_tag(from_part::Int, to_part::Int)::Int32
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Int32((from_part % 65536) << 16 | (to_part % 65536))
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end
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function JuliaFEM.allocate_exchange_matvec_halo_mpi_requests(exchange::RankHaloExchange)
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n = matvec_halo_mpi_request_count(exchange)
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return Vector{MPI.Request}(undef, n)
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end
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function JuliaFEM.exchange_matvec_halos_mpi!(
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recv_vals::Vector{Vector{Float64}},
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send_vals::Vector{Vector{Float64}},
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packed::AbstractVector{Float64},
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layout::PartitionPackedLayout,
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exchange::RankHaloExchange,
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comm::MPI.Comm;
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mpi_requests = nothing,
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)
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pack_halo_send_from_packed!(send_vals, packed, exchange, layout)
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part = exchange.part
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rank = MPI.Comm_rank(comm)
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rank + 1 == part ||
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throw(ArgumentError("MPI rank $rank inconsistent with exchange.part $part (expected rank $(part - 1))"))
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nr = length(exchange.recv_neighbor)
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ns = length(exchange.send_neighbor)
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nreq = nr + ns
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if mpi_requests === nothing
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reqs = Vector{MPI.Request}(undef, nreq)
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else
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length(mpi_requests) == nreq ||
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throw(DimensionMismatch(
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"mpi_requests length $(length(mpi_requests)), expected $nreq " *
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"(recv neighbors $nr + send neighbors $ns)",
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))
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reqs = mpi_requests
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end
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ri = 0
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@inbounds for k in eachindex(exchange.recv_neighbor)
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q = exchange.recv_neighbor[k]
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src = q - 1
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tag = _matvec_halo_mpi_tag(q, part)
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ri += 1
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reqs[ri] = MPI.Irecv!(recv_vals[k], src, tag, comm)
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end
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@inbounds for k in eachindex(exchange.send_neighbor)
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q = exchange.send_neighbor[k]
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dest = q - 1
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tag = _matvec_halo_mpi_tag(part, q)
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ri += 1
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reqs[ri] = MPI.Isend(send_vals[k], dest, tag, comm)
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end
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MPI.Waitall(reqs)
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return nothing
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end
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function JuliaFEM.mpi_owned_dot_global(
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a::AbstractVector{Float64},
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b::AbstractVector{Float64},
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layout::PartitionPackedLayout,
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comm::MPI.Comm,
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)::Float64
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local_s = owned_dot_global_vecs(a, b, layout)
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return MPI.Allreduce(local_s, MPI.SUM, comm)
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end
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function JuliaFEM.mpi_owned_dot_local(
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a_owned::AbstractVector{Float64},
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b_owned::AbstractVector{Float64},
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comm::MPI.Comm,
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)::Float64
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length(a_owned) == length(b_owned) ||
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throw(DimensionMismatch("mpi_owned_dot_local: length $(length(a_owned)) != $(length(b_owned))"))
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local_s = 0.0
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@inbounds for k in eachindex(a_owned)
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local_s += a_owned[k] * b_owned[k]
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end
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return MPI.Allreduce(local_s, MPI.SUM, comm)
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end
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# Owned-row matvec only (no full-vector Allreduce): trial stays in `packed`, no `ndofs_global` work buffer.
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function JuliaFEM.mpi_partitioned_operator_matvec_owned!(
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Ap_owned::AbstractVector{Float64},
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p_owned::AbstractVector{Float64},
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packed::AbstractVector{Float64},
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recv_vals::Vector{Vector{Float64}},
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send_vals::Vector{Vector{Float64}},
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layout::PartitionPackedLayout,
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exchange::RankHaloExchange,
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cache::DOFBasedCOOCache,
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assembler::DOFBasedCOOAssembler,
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kernel::AbstractKernel,
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mesh::AbstractMesh,
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comm::MPI.Comm;
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dirichlet = nothing,
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mpi_requests = nothing,
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)
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copy_owned_subset_to_packed_owned_prefix!(packed, p_owned, layout)
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exchange_matvec_halos_mpi!(
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recv_vals, send_vals, packed, layout, exchange, comm; mpi_requests = mpi_requests)
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unpack_halo_recv_to_packed!(packed, recv_vals, exchange, layout)
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apply_K_owned_rows_from_packed!(Ap_owned, packed, layout, cache, assembler, kernel, mesh)
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if dirichlet !== nothing
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dirichlet isa PenaltyDirichlet ||
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throw(ArgumentError(
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"mpi_partitioned_operator_matvec_owned! supports PenaltyDirichlet only (got $(typeof(dirichlet)))",
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))
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apply_penalty_dirichlet_post_ap_owned!(Ap_owned, packed, layout, dirichlet)
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end
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return Ap_owned
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end
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# Global replicated matvec: owned-row stiffness + `MPI.Allreduce!`, then optional penalty BC post-hook.
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function JuliaFEM.mpi_partitioned_operator_matvec!(
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Ap::AbstractVector{Float64},
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p::AbstractVector{Float64},
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packed::AbstractVector{Float64},
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work::AbstractVector{Float64},
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recv_vals::Vector{Vector{Float64}},
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send_vals::Vector{Vector{Float64}},
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layout::PartitionPackedLayout,
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exchange::RankHaloExchange,
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cache::DOFBasedCOOCache,
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assembler::DOFBasedCOOAssembler,
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kernel::AbstractKernel,
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mesh::AbstractMesh,
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comm::MPI.Comm;
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dirichlet = nothing,
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mpi_requests = nothing,
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)
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gather_owned_from_global_to_packed!(packed, p, layout)
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exchange_matvec_halos_mpi!(
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recv_vals, send_vals, packed, layout, exchange, comm; mpi_requests = mpi_requests)
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unpack_halo_recv_to_packed!(packed, recv_vals, exchange, layout)
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fill!(work, 0.0)
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expand_packed_to_global!(work, packed, layout)
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fill!(Ap, 0.0)
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apply_K_owned_rows!(Ap, layout.owned_rows, cache, assembler, kernel, mesh, work)
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MPI.Allreduce!(Ap, MPI.SUM, comm)
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if dirichlet !== nothing
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apply_constraint_post!(Ap, p, dirichlet)
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end
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return Ap
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end
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end # module JuliaFEMMPIExt
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