alloc improvements

This commit is contained in:
Kristoffer Carlsson
2018-12-03 15:04:16 -05:00
parent 09c355b916
commit 2aca9f0d0c
+39 -20
View File
@@ -79,7 +79,7 @@ function assemble!(assembly::Assembly, problem::Problem{Elasticity},
assemblers = [FEMSparse.start_assemble(assembly.K_csc, assembly.f_csc) for i in 1:Threads.nthreads()]
local_buffers = [allocate_buffer(problem, elements) for i in 1:Threads.nthreads()]
for (color, elements) in FEMBase.get_color_ranges(elements)
for i in 1:length(elements)
Threads.@threads for i in 1:length(elements)
element = elements[i]
tid = Threads.threadid()
assemble_element!(assembly, assemblers[tid], problem, element, local_buffers[tid], time, formulation, true)
@@ -133,6 +133,9 @@ Parameters.@with_kw struct Elasticity3DLocalBuffers{B, T}
Kg :: Matrix{T} = zeros(ndofs, ndofs)
f_int :: Vector{T} = zeros(ndofs)
f_ext :: Vector{T} = zeros(ndofs)
f_buffer :: Vector{T} = zeros(ndofs)
f_buffer_dim :: Vector{T} = zeros(div(ndofs, dim))
gdofs :: Vector{Int} = zeros(Int, ndofs)
gradu :: Matrix{T} = zeros(dim, dim)
strain :: Matrix{T} = zeros(dim, dim)
strain_vec :: Vector{T} = zeros(6)
@@ -182,6 +185,9 @@ function to_voigt!(strain_vec, strain)
return
end
const u = ([0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0], [0.0, 0.0, 0.0])
const X = ([-93.7197, -93.7197, 150.883], [-91.657, -85.8251, 157.885], [-100.523, -88.8309, 157.883], [-91.6593, -88.8309, 157.883], [-92.6883, -89.7724, 154.384], [-96.0902, -87.328, 157.883], [-97.1216, -91.2753, 154.383], [-92.6895, -91.2753, 154.383], [-91.6581, -87.328, 157.883], [-96.0914, -88.8309, 157.883])
const displacement_load_string = [string("displacement load ", i) for i in 1:3]
""" Assemble 3d continuum elements in general solid mechanics problem. """
function assemble_element!(assembly::Assembly,
assembler::FEMSparse.AssemblerSparsityPattern,
@@ -190,16 +196,19 @@ function assemble_element!(assembly::Assembly,
local_buffer::Elasticity3DLocalBuffers,
time, ::Type{Val{:continuum}},
use_csc = false) where El<:Elasticity3DVolumeElements
cheating = false
props = problem.properties
dim = get_unknown_field_dimension(problem)
nnodes = length(El)
ndofs = dim*nnodes
Parameters.@unpack bi, BL, BNL, Km, Kg, f_int, f_ext, gradu, strain,
Parameters.@unpack bi, BL, BNL, Km, Kg, f_int, f_ext, f_buffer, f_buffer_dim, gdofs, gradu, strain,
strain_vec, stress_vec, F, D, Dtan, Bt_mul_D, Bt_mul_D_mul_B, Bt_mul_S = local_buffer
u = element("displacement", time)
X = element("geometry", time)
if !cheating
u = element("displacement", time)
X = element("geometry", time)
end
reset_element!(local_buffer)
for ip in get_integration_points(element)
@@ -211,12 +220,15 @@ function assemble_element!(assembly::Assembly,
grad!(bi, gradu, u) # displacement gradient ∇u
# calculate strain tensor and deformation gradient
F[:,:] += I
#F[:,:] += I
for i in 1:dim
F[i, i] += 1.0
end
if props.finite_strain
strain[:,:] = 1/2 * (gradu + gradu' + gradu'*gradu)
F[:,:] += gradu
else
strain[:,:] = 1/2 * (gradu + gradu')
strain[:,:] .= 1/2 .* (gradu .+ gradu')
end
to_voigt!(strain_vec, strain)
@@ -260,10 +272,13 @@ function assemble_element!(assembly::Assembly,
# calculate stress
E = element("youngs modulus", ip, time)::Float64
nu = element("poissons ratio", ip, time)::Float64
#E = 200e3
#nu = 0.3
if cheating
E = 200e3
nu = 0.3
else
E = element("youngs modulus", ip, time)::Float64
nu = element("poissons ratio", ip, time)::Float64
end
la = E*nu/((1.0+nu)*(1.0-2.0*nu))
mu = E/(2.0*(1.0+nu))
D[1,1] = D[2,2] = D[3,3] = 2*mu + la
@@ -272,6 +287,7 @@ function assemble_element!(assembly::Assembly,
# determine material model
material_model = :linear_elasticity
if haskey(element, "plasticity")
material_model = :ideal_plasticity
@@ -280,8 +296,8 @@ function assemble_element!(assembly::Assembly,
# calculate stress vector based on material model
if material_model == :linear_elasticity
Dtan[:,:] = D[:,:]
stress_vec[:] = Dtan * strain_vec
copyto!(Dtan, D)
mul!(stress_vec, Dtan, strain_vec)
end
if material_model == :ideal_plasticity
@@ -328,7 +344,6 @@ function assemble_element!(assembly::Assembly,
end
# material stiffness end
if props.geometric_stiffness
# take geometric stiffness into account
@@ -365,29 +380,33 @@ function assemble_element!(assembly::Assembly,
# external load start
if haskey(element, "displacement load")
T = element("displacement load", ip, time)::Vector{Float64}
f_ext += w*vec(T*N)
mul!(f_buffer, w, vec(T*N))
f_ext .+= f_buffer
end
for i=1:dim
if haskey(element, "displacement load $i")
b = element("displacement load $i", ip, time)
f_ext[i:dim:end] += w*vec(b*N)
if haskey(element, displacement_load_string[i])
b = element(displacement_load_string[i], ip, time)::Float64
mul!(f_buffer_dim, w, N)
for (i, j) in enumerate(1:dim:length(f_ext))
f_ext[j] = b * f_buffer_dim[i]
end
end
end
# external load end
end
gdofs = get_gdofs(problem, element)
FEMBase.get_gdofs!(gdofs, problem, element)
# Update f_ext in place to be f_ext - f_int
f_ext .-= f_int
if use_csc
# add contributions to K, Kg, f
FEMSparse.assemble_local!(assembler, gdofs, Km, f_ext)
@inbounds FEMSparse.assemble_local!(assembler, gdofs, Km, f_ext)
if props.geometric_stiffness
FEMSparse.assemble_local_matrix!(assembler, gdofs, Kg)
@inbounds FEMSparse.assemble_local_matrix!(assembler, gdofs, Kg)
end
else
add!(assembly.f, gdofs, f_ext)