mirror of
https://github.com/JuliaFEM/JuliaFEM.jl.git
synced 2026-09-28 04:35:08 +00:00
Cleanup of obsolete files
A lot of old files from old documentation systems etc. is in package. These are now removed or moved. Old notebooks are in docs/tutorials. This PR closes issue #124.
This commit is contained in:
Jukka Aho
@@ -1,246 +0,0 @@
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# You can set these variables from the command line.
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SPHINXOPTS =
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SPHINXBUILD = sphinx-build
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PAPER =
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BUILDDIR = docs/build
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# User-friendly check for sphinx-build
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ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $$?), 1)
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$(error The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/)
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endif
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# Internal variables.
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PAPEROPT_a4 = -D latex_paper_size=a4
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PAPEROPT_letter = -D latex_paper_size=letter
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# ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) docs
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ALLSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) docs
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# the i18n builder cannot share the environment and doctrees with the others
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I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source
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.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest coverage gettext build apidoc copyreadme convert_notebooks wwwdeploy
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#build:
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# julia -e 'Pkg.init(); Pkg.clone(pwd()); Pkg.build("JuliaFEM")'
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#build:
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# julia -e 'Pkg.init(); Pkg.clone(pwd(), "JuliaFEM"); Pkg.build("JuliaFEM")'
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build:
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julia -e 'Pkg.build("JuliaFEM")'
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# create .md files from function docstrings
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apidoc:
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julia docs/build_api.jl
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# copy readme to correct place in docs root
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#copyreadme:
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# cp README.md docs/index.md
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# convert notebooks to md files
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convert_notebooks:
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julia docs/build_notebooks.jl
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fix_permissions:
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find docs/build/html -type d -exec chmod 775 {} \; && find docs/build/html -type f -exec chmod 664 {} \;
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lint:
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julia docs/build_lint.jl
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unittests:
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julia docs/build_unittests.jl
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doctests:
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julia docs/build_doctests.jl
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.PHONY: test
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test:
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julia -e 'Pkg.test("JuliaFEM")'
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# usage: make test_file FILE=test/test_heat.jl
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# or even: watch make test_file FILE=test/test_heat.jl
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test_file:
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timeout 30 julia -e 'using JuliaFEM.Test; run_test("$(FILE)"); print_test_statistics()'
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# usage: make test_function FILE=test/test_fields.jl FUNCTION=test_increment
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# or even: watch ...
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test_function:
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julia -e 'using JuliaFEM.Test; run_test("$(FILE)", :$(FUNCTION)); print_test_statistics()'
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pillu:
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julia -e 'println("\x1b[31m\"red\"\x1b[0m")'
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#coverage_report:
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# julia -e 'Pkg.test("JuliaFEM"; coverage=true); cd(Pkg.dir("JuliaFEM")); Pkg.add("Coverage"); using Coverage; Coveralls.submit(Coveralls.process_folder())'
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help:
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@echo "Please use \`make <target>' where <target> is one of"
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@echo " html to make standalone HTML files"
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@echo " dirhtml to make HTML files named index.html in directories"
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@echo " singlehtml to make a single large HTML file"
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@echo " pickle to make pickle files"
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@echo " json to make JSON files"
|
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@echo " htmlhelp to make HTML files and a HTML help project"
|
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@echo " qthelp to make HTML files and a qthelp project"
|
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@echo " applehelp to make an Apple Help Book"
|
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@echo " devhelp to make HTML files and a Devhelp project"
|
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@echo " epub to make an epub"
|
||||
@echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
|
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@echo " latexpdf to make LaTeX files and run them through pdflatex"
|
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@echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx"
|
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@echo " text to make text files"
|
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@echo " man to make manual pages"
|
||||
@echo " texinfo to make Texinfo files"
|
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@echo " info to make Texinfo files and run them through makeinfo"
|
||||
@echo " gettext to make PO message catalogs"
|
||||
@echo " changes to make an overview of all changed/added/deprecated items"
|
||||
@echo " xml to make Docutils-native XML files"
|
||||
@echo " pseudoxml to make pseudoxml-XML files for display purposes"
|
||||
@echo " linkcheck to check all external links for integrity"
|
||||
@echo " doctest to run all doctests embedded in the documentation (if enabled)"
|
||||
@echo " coverage to run coverage check of the documentation (if enabled)"
|
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clean:
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rm -rf $(BUILDDIR)/*
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|
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html:
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$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
|
||||
@echo
|
||||
@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
|
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|
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dirhtml:
|
||||
$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
|
||||
@echo
|
||||
@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
|
||||
|
||||
singlehtml:
|
||||
$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
|
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@echo
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@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
|
||||
|
||||
pickle:
|
||||
$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
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@echo
|
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@echo "Build finished; now you can process the pickle files."
|
||||
|
||||
json:
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||||
$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
|
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@echo
|
||||
@echo "Build finished; now you can process the JSON files."
|
||||
|
||||
htmlhelp:
|
||||
$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
|
||||
@echo
|
||||
@echo "Build finished; now you can run HTML Help Workshop with the" \
|
||||
".hhp project file in $(BUILDDIR)/htmlhelp."
|
||||
|
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qthelp:
|
||||
$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
|
||||
@echo
|
||||
@echo "Build finished; now you can run "qcollectiongenerator" with the" \
|
||||
".qhcp project file in $(BUILDDIR)/qthelp, like this:"
|
||||
@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/asdf.qhcp"
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||||
@echo "To view the help file:"
|
||||
@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/asdf.qhc"
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||||
|
||||
applehelp:
|
||||
$(SPHINXBUILD) -b applehelp $(ALLSPHINXOPTS) $(BUILDDIR)/applehelp
|
||||
@echo
|
||||
@echo "Build finished. The help book is in $(BUILDDIR)/applehelp."
|
||||
@echo "N.B. You won't be able to view it unless you put it in" \
|
||||
"~/Library/Documentation/Help or install it in your application" \
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"bundle."
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|
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devhelp:
|
||||
$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
|
||||
@echo
|
||||
@echo "Build finished."
|
||||
@echo "To view the help file:"
|
||||
@echo "# mkdir -p $$HOME/.local/share/devhelp/asdf"
|
||||
@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/asdf"
|
||||
@echo "# devhelp"
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||||
|
||||
epub:
|
||||
$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
|
||||
@echo
|
||||
@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
|
||||
|
||||
latex:
|
||||
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
|
||||
@echo
|
||||
@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
|
||||
@echo "Run \`make' in that directory to run these through (pdf)latex" \
|
||||
"(use \`make latexpdf' here to do that automatically)."
|
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|
||||
latexpdf:
|
||||
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
|
||||
@echo "Running LaTeX files through pdflatex..."
|
||||
$(MAKE) -C $(BUILDDIR)/latex all-pdf
|
||||
@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
|
||||
|
||||
latexpdfja:
|
||||
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
|
||||
@echo "Running LaTeX files through platex and dvipdfmx..."
|
||||
$(MAKE) -C $(BUILDDIR)/latex all-pdf-ja
|
||||
@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
|
||||
|
||||
text:
|
||||
$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
|
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@echo
|
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@echo "Build finished. The text files are in $(BUILDDIR)/text."
|
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|
||||
man:
|
||||
$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
|
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@echo
|
||||
@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
|
||||
|
||||
texinfo:
|
||||
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
|
||||
@echo
|
||||
@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
|
||||
@echo "Run \`make' in that directory to run these through makeinfo" \
|
||||
"(use \`make info' here to do that automatically)."
|
||||
|
||||
info:
|
||||
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
|
||||
@echo "Running Texinfo files through makeinfo..."
|
||||
make -C $(BUILDDIR)/texinfo info
|
||||
@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
|
||||
|
||||
gettext:
|
||||
$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
|
||||
@echo
|
||||
@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
|
||||
|
||||
changes:
|
||||
$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
|
||||
@echo
|
||||
@echo "The overview file is in $(BUILDDIR)/changes."
|
||||
|
||||
linkcheck:
|
||||
$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
|
||||
@echo
|
||||
@echo "Link check complete; look for any errors in the above output " \
|
||||
"or in $(BUILDDIR)/linkcheck/output.txt."
|
||||
|
||||
doctest:
|
||||
$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
|
||||
@echo "Testing of doctests in the sources finished, look at the " \
|
||||
"results in $(BUILDDIR)/doctest/output.txt."
|
||||
|
||||
coverage:
|
||||
$(SPHINXBUILD) -b coverage $(ALLSPHINXOPTS) $(BUILDDIR)/coverage
|
||||
@echo "Testing of coverage in the sources finished, look at the " \
|
||||
"results in $(BUILDDIR)/coverage/python.txt."
|
||||
|
||||
xml:
|
||||
$(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml
|
||||
@echo
|
||||
@echo "Build finished. The XML files are in $(BUILDDIR)/xml."
|
||||
|
||||
pseudoxml:
|
||||
$(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml
|
||||
@echo
|
||||
@echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml."
|
||||
@@ -1,3 +0,0 @@
|
||||
Tero Frondelius
|
||||
Jukka Aho <jukka.aho@kapsi.fi>
|
||||
Olli Väinölä
|
||||
Vendored
-1
@@ -1 +0,0 @@
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<svg xmlns="http://www.w3.org/2000/svg" width="81" height="20"><linearGradient id="b" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><mask id="a"><rect width="81" height="20" rx="3" fill="#fff"/></mask><g mask="url(#a)"><path fill="#555" d="M0 0h37v20H0z"/><path fill="#e05d44" d="M37 0h44v20H37z"/><path fill="url(#b)" d="M0 0h81v20H0z"/></g><g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"><text x="18.5" y="15" fill="#010101" fill-opacity=".3">build</text><text x="18.5" y="14">build</text><text x="58" y="15" fill="#010101" fill-opacity=".3">failing</text><text x="58" y="14">failing</text></g></svg>
|
||||
|
Before Width: | Height: | Size: 735 B |
-1
@@ -1 +0,0 @@
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<svg xmlns="http://www.w3.org/2000/svg" width="90" height="20"><linearGradient id="b" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><mask id="a"><rect width="90" height="20" rx="3" fill="#fff"/></mask><g mask="url(#a)"><path fill="#555" d="M0 0h37v20H0z"/><path fill="#4c1" d="M37 0h53v20H37z"/><path fill="url(#b)" d="M0 0h90v20H0z"/></g><g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"><text x="18.5" y="15" fill="#010101" fill-opacity=".3">build</text><text x="18.5" y="14">build</text><text x="62.5" y="15" fill="#010101" fill-opacity=".3">passing</text><text x="62.5" y="14">passing</text></g></svg>
|
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|
Before Width: | Height: | Size: 736 B |
-1
@@ -1 +0,0 @@
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<svg xmlns="http://www.w3.org/2000/svg" width="98" height="20"><linearGradient id="b" x2="0" y2="100%"><stop offset="0" stop-color="#bbb" stop-opacity=".1"/><stop offset="1" stop-opacity=".1"/></linearGradient><mask id="a"><rect width="98" height="20" rx="3" fill="#fff"/></mask><g mask="url(#a)"><path fill="#555" d="M0 0h37v20H0z"/><path fill="#9f9f9f" d="M37 0h61v20H37z"/><path fill="url(#b)" d="M0 0h98v20H0z"/></g><g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"><text x="18.5" y="15" fill="#010101" fill-opacity=".3">build</text><text x="18.5" y="14">build</text><text x="66.5" y="15" fill="#010101" fill-opacity=".3">unknown</text><text x="66.5" y="14">unknown</text></g></svg>
|
||||
|
Before Width: | Height: | Size: 739 B |
@@ -1,14 +0,0 @@
|
||||
# JuliaFEM.abaqus_reader
|
||||
|
||||
## Internal
|
||||
|
||||
---
|
||||
|
||||
<a id="method__add_handler.1" class="lexicon_definition"></a>
|
||||
#### add_handler(section, function_name) [¶](#method__add_handler.1)
|
||||
Register new handler for parser
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/abaqus_reader.jl:18](https://github.com/JuliaFEM/JuliaFEM.jl/tree/b8194d0c137963b44aab6b223a22491f9b0f7774/src/abaqus_reader.jl#L18)
|
||||
|
||||
@@ -1,190 +0,0 @@
|
||||
# JuliaFEM.elasticity_solver
|
||||
|
||||
## Internal
|
||||
|
||||
---
|
||||
|
||||
<a id="method__assemble.1" class="lexicon_definition"></a>
|
||||
#### assemble!(fe, eldofs_, I, V) [¶](#method__assemble.1)
|
||||
Assemble global RHS to I,V ready for sparse format
|
||||
|
||||
Parameters
|
||||
----------
|
||||
fe : local vector
|
||||
eldofs_ : Array
|
||||
degrees of freedom
|
||||
I,V : Arrays for sparse matrix
|
||||
|
||||
Notes
|
||||
-----
|
||||
eldofs can also be node ids for convenience. In that case dimension
|
||||
is calculated and eldofs are "extended" to problem dimension.
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:174](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L174)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__assemble.2" class="lexicon_definition"></a>
|
||||
#### assemble!(ke, eldofs_, I, J, V) [¶](#method__assemble.2)
|
||||
Assemble global stiffness matrix to I,J,V ready for sparse format
|
||||
|
||||
Parameters
|
||||
----------
|
||||
ke : local matrix
|
||||
eldofs_ : Array
|
||||
degrees of freedom
|
||||
I,J,V : Arrays for sparse matrix
|
||||
|
||||
Notes
|
||||
-----
|
||||
eldofs can also be node ids for convenience. In that case dimension
|
||||
is calculated and eldofs are "extended" to problem dimension.
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:133](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L133)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__calc_local_matrices.1" class="lexicon_definition"></a>
|
||||
#### calc_local_matrices!(X, u, R, K, basis, dbasis, lambda_, mu_, ipoints, iweights) [¶](#method__calc_local_matrices.1)
|
||||
Calculate local tangent stiffness matrix and residual force vector
|
||||
R = T - F for elasticity problem.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
X : Element coordinates
|
||||
u : Displacement field
|
||||
R : Residual force vector
|
||||
K : Tangent stiffness matrix
|
||||
basis : Basis functions
|
||||
dbasis : Derivative of basis functions
|
||||
lambda : Material parameter
|
||||
mu : Material parameter
|
||||
ipoints : integration points
|
||||
iweights : integration weights
|
||||
|
||||
Returns
|
||||
-------
|
||||
None
|
||||
|
||||
Notes
|
||||
-----
|
||||
If material parameters are given in list, they are interpolated to gauss
|
||||
points using shape functions.
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:76](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L76)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__dummy.1" class="lexicon_definition"></a>
|
||||
#### dummy(a) [¶](#method__dummy.1)
|
||||
This is dummy function. Testing doctests and documentation.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
x : Array{Float64, 1}
|
||||
|
||||
Returns
|
||||
-------
|
||||
Array{float64, 1}
|
||||
x + 1
|
||||
|
||||
Notes
|
||||
-----
|
||||
This is dummy function
|
||||
|
||||
Raises
|
||||
------
|
||||
Exception
|
||||
if things are not going right
|
||||
|
||||
Examples
|
||||
--------
|
||||
>>> a = [1.0, 2.0, 3.0]
|
||||
>>> dummy(a)
|
||||
[2.0, 3.0, 4.0]
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:44](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L44)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__eliminate_boundary_conditions.1" class="lexicon_definition"></a>
|
||||
#### eliminate_boundary_conditions(dirichletbc, I, J, V) [¶](#method__eliminate_boundary_conditions.1)
|
||||
Eliminate Dirichlet boundary conditions from matrix
|
||||
|
||||
Parameters
|
||||
----------
|
||||
dirichletbc : array [dim x nnodes]
|
||||
I, J, V : sparse matrix arrays
|
||||
|
||||
Returns
|
||||
-------
|
||||
I, J, V : boundary conditions removed
|
||||
|
||||
Notes
|
||||
-----
|
||||
pros:
|
||||
- matrix assembly remains positive definite
|
||||
cons:
|
||||
- maybe inefficient because of extra sparse matrix operations. (It's hard to remove stuff from sparse matrix.)
|
||||
- if u != 0 in dirichlet boundary requires extra care
|
||||
|
||||
Raises
|
||||
------
|
||||
Exception, if displacement boundary conditions given, i.e.
|
||||
DX=2 for some node, for example.
|
||||
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:221](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L221)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__eliminate_boundary_conditions.2" class="lexicon_definition"></a>
|
||||
#### eliminate_boundary_conditions(dirichletbc, I, V) [¶](#method__eliminate_boundary_conditions.2)
|
||||
Eliminate Dirichlet boundary conditions from vector
|
||||
|
||||
Parameters
|
||||
----------
|
||||
dirichletbc : array [dim x nnodes]
|
||||
I, V : sparse vector arrays
|
||||
|
||||
Returns
|
||||
-------
|
||||
I, V : boundary conditions removed
|
||||
|
||||
Notes
|
||||
-----
|
||||
pros:
|
||||
- matrix assembly remains positive definite
|
||||
cons:
|
||||
- maybe inefficient because of extra sparse matrix operations. (It's hard to remove stuff from sparse matrix.)
|
||||
- if u != 0 in dirichlet boundary requires extra care
|
||||
|
||||
Raises
|
||||
------
|
||||
Exception, if displacement boundary conditions given, i.e.
|
||||
DX=2 for some node, for example.
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:260](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L260)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__solve_elasticity_increment.1" class="lexicon_definition"></a>
|
||||
#### solve_elasticity_increment!(X, u, du, elmap, nodalloads, dirichletbc, lambda, mu, N, dNdchi, ipoints, iweights) [¶](#method__solve_elasticity_increment.1)
|
||||
Solve one increment of elasticity problem
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elasticity_solver.jl:281](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elasticity_solver.jl#L281)
|
||||
|
||||
@@ -1,103 +0,0 @@
|
||||
JuliaFEM.elasticity_solver
|
||||
==========================
|
||||
|
||||
Internal
|
||||
--------
|
||||
|
||||
.. function:: assemble!(fe, eldofs_, I, V)
|
||||
|
||||
Assemble global RHS to I,V ready for sparse format
|
||||
|
||||
:param fe : local vector
|
||||
:param eldofs_ : Array
|
||||
:param I,V : Arrays for sparse matrix
|
||||
:notes: eldofs can also be node ids for convenience. In that case dimension
|
||||
is calculated and eldofs are "extended" to problem dimension.
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:174]
|
||||
|
||||
.. function:: assemble!(ke, eldofs_, I, J, V)
|
||||
|
||||
Assemble global stiffness matrix to I,J,V ready for sparse format
|
||||
|
||||
:param ke : local matrix
|
||||
:param eldofs_ : Array
|
||||
:param I,J,V : Arrays for sparse matrix
|
||||
:notes: eldofs can also be node ids for convenience. In that case dimension
|
||||
is calculated and eldofs are "extended" to problem dimension.
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:133]
|
||||
|
||||
.. function:: calc_local_matrices!(X, u, R, K, basis, dbasis, lambda_, mu_, ipoints, iweights)
|
||||
|
||||
Calculate local tangent stiffness matrix and residual force vector
|
||||
R = T - F for elasticity problem.
|
||||
|
||||
:param X : Element coordinates
|
||||
:param u : Displacement field
|
||||
:param R : Residual force vector
|
||||
:param K : Tangent stiffness matrix
|
||||
:param basis : Basis functions
|
||||
:param dbasis : Derivative of basis functions
|
||||
:param lambda : Material parameter
|
||||
:param mu : Material parameter
|
||||
:param ipoints : integration points
|
||||
:param iweights : integration weights
|
||||
:returns: None
|
||||
:notes: If material parameters are given in list, they are interpolated to gauss
|
||||
points using shape functions.
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:76]
|
||||
|
||||
.. function:: dummy(a)
|
||||
|
||||
This is dummy function. Testing doctests and documentation.
|
||||
|
||||
:param x : Array{Float64, 1}
|
||||
:returns: Array{float64, 1}
|
||||
x + 1
|
||||
:notes: This is dummy function
|
||||
:raises: Exception
|
||||
if things are not going right
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:44]
|
||||
|
||||
.. function:: eliminate_boundary_conditions(dirichletbc, I, J, V)
|
||||
|
||||
Eliminate Dirichlet boundary conditions from matrix
|
||||
|
||||
:param dirichletbc : array [dim x nnodes]
|
||||
:param I, J, V : sparse matrix arrays
|
||||
:returns: I, J, V : boundary conditions removed
|
||||
:notes: pros:
|
||||
- matrix assembly remains positive definite
|
||||
cons:
|
||||
- maybe inefficient because of extra sparse matrix operations. (It's hard to remove stuff from sparse matrix.)
|
||||
- if u != 0 in dirichlet boundary requires extra care
|
||||
:raises: Exception, if displacement boundary conditions given, i.e.
|
||||
DX=2 for some node, for example.
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:221]
|
||||
|
||||
.. function:: eliminate_boundary_conditions(dirichletbc, I, V)
|
||||
|
||||
Eliminate Dirichlet boundary conditions from vector
|
||||
|
||||
:param dirichletbc : array [dim x nnodes]
|
||||
:param I, V : sparse vector arrays
|
||||
:returns: I, V : boundary conditions removed
|
||||
:notes: pros:
|
||||
- matrix assembly remains positive definite
|
||||
cons:
|
||||
- maybe inefficient because of extra sparse matrix operations. (It's hard to remove stuff from sparse matrix.)
|
||||
- if u != 0 in dirichlet boundary requires extra care
|
||||
:raises: Exception, if displacement boundary conditions given, i.e.
|
||||
DX=2 for some node, for example.
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:260]
|
||||
|
||||
.. function:: solve_elasticity_increment!(X, u, du, elmap, nodalloads, dirichletbc, lambda, mu, N, dNdchi, ipoints, iweights)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elasticity_solver.jl:281]
|
||||
|
||||
@@ -1,19 +0,0 @@
|
||||
# JuliaFEM.interfaces
|
||||
|
||||
## Exported
|
||||
|
||||
---
|
||||
|
||||
<a id="method__solve_elasticity_interface.1" class="lexicon_definition"></a>
|
||||
#### solve_elasticity_interface!() [¶](#method__solve_elasticity_interface.1)
|
||||
This is generic interface that reads data from data model, solves elasticity
|
||||
problem and updates model.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
model : to be defined
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/interfaces.jl:22](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/interfaces.jl#L22)
|
||||
|
||||
@@ -1,15 +0,0 @@
|
||||
JuliaFEM.interfaces
|
||||
===================
|
||||
|
||||
Exported
|
||||
--------
|
||||
|
||||
.. function:: solve_elasticity_interface!()
|
||||
|
||||
This is generic interface that reads data from data model, solves elasticity
|
||||
problem and updates model.
|
||||
|
||||
:param model : to be defined
|
||||
**source**
|
||||
[JuliaFEM/src/interfaces.jl:22]
|
||||
|
||||
@@ -1,260 +0,0 @@
|
||||
# JuliaFEM
|
||||
|
||||
## Exported
|
||||
|
||||
---
|
||||
|
||||
<a id="method__get_coordinates.1" class="lexicon_definition"></a>
|
||||
#### get_coordinates(el::JuliaFEM.Element) [¶](#method__get_coordinates.1)
|
||||
Return coordinates of element in array of size dim x nnodes
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:29](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L29)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__integrate.2" class="lexicon_definition"></a>
|
||||
#### integrate(f::Function) [¶](#method__integrate.2)
|
||||
This version returns a function which must be operated with element e
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:163](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L163)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__integrate.3" class="lexicon_definition"></a>
|
||||
#### integrate(f::Function, el::JuliaFEM.Element) [¶](#method__integrate.3)
|
||||
Integrate f over element using Gaussian quadrature rules.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
el::Element
|
||||
well defined element
|
||||
f::Function
|
||||
Function to integrate
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:143](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L143)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__interpolate.1" class="lexicon_definition"></a>
|
||||
#### interpolate(field::Float64, basis::Function, ip::Array{Float64, 1}) [¶](#method__interpolate.1)
|
||||
Interpolate field variable using basis functions f for point ip.
|
||||
This function tries to be as general as possible and allows interpolating
|
||||
lot of different fields.
|
||||
|
||||
Parameters
|
||||
----------
|
||||
field :: Array{Number, dim}
|
||||
Field variable
|
||||
basis :: Function
|
||||
Basis functions
|
||||
ip :: Array{Number, 1}
|
||||
Point to interpolate
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:26](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L26)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__linearize.2" class="lexicon_definition"></a>
|
||||
#### linearize(f::Function, el::JuliaFEM.Element, field::ASCIIString) [¶](#method__linearize.2)
|
||||
Linearize function f w.r.t some given field, i.e. calculate dR/du
|
||||
|
||||
Parameters
|
||||
----------
|
||||
f::Function
|
||||
(possibly) nonlinear function to linearize
|
||||
field::ASCIIString
|
||||
field variable
|
||||
|
||||
Returns
|
||||
-------
|
||||
Array{Float64, 2}
|
||||
jacobian / "tangent stiffness matrix"
|
||||
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:85](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L85)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__linearize.3" class="lexicon_definition"></a>
|
||||
#### linearize(f::Function, field::ASCIIString) [¶](#method__linearize.3)
|
||||
This version returns another function which can be then evaluated against field
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:100](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L100)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__set_coordinates.1" class="lexicon_definition"></a>
|
||||
#### set_coordinates(el::JuliaFEM.Element, coordinates) [¶](#method__set_coordinates.1)
|
||||
Set coordinates for element
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:36](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L36)
|
||||
|
||||
## Internal
|
||||
|
||||
---
|
||||
|
||||
<a id="method__add_handler.1" class="lexicon_definition"></a>
|
||||
#### add_handler(section, function_name) [¶](#method__add_handler.1)
|
||||
Register new handler for parser
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/abaqus_reader.jl:13](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/abaqus_reader.jl#L13)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__create_lagrange_element.1" class="lexicon_definition"></a>
|
||||
#### create_lagrange_element(element_name, X, P, dP) [¶](#method__create_lagrange_element.1)
|
||||
Create new Lagrange element
|
||||
|
||||
FIXME: this is not working
|
||||
|
||||
LoadError: error compiling anonymous: type definition not allowed inside a local scope
|
||||
|
||||
It's the for loop which is causing problems. See
|
||||
https://github.com/JuliaLang/julia/issues/10555
|
||||
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:64](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L64)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__get_dbasisdx.1" class="lexicon_definition"></a>
|
||||
#### get_dbasisdX(el::JuliaFEM.Element, xi) [¶](#method__get_dbasisdx.1)
|
||||
Evaluate partial derivatives of basis function w.r.t
|
||||
material description X, i.e. dbasis/dX
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:20](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L20)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__get_element_id.1" class="lexicon_definition"></a>
|
||||
#### get_element_id(el::JuliaFEM.Element) [¶](#method__get_element_id.1)
|
||||
Get element id
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:43](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L43)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__get_jacobian.1" class="lexicon_definition"></a>
|
||||
#### get_jacobian(el::JuliaFEM.Element, xi) [¶](#method__get_jacobian.1)
|
||||
Get jacobian of element evaluated at point xi
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:9](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L9)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__integrate.1" class="lexicon_definition"></a>
|
||||
#### integrate!(f::Function, el::JuliaFEM.Element, target) [¶](#method__integrate.1)
|
||||
This version saves results inplace to target, garbage collection free
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:178](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L178)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__linearize.1" class="lexicon_definition"></a>
|
||||
#### linearize!(f::Function, el::JuliaFEM.Element, field::ASCIIString, target::ASCIIString) [¶](#method__linearize.1)
|
||||
In-place version, no additional garbage collection.
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/math.jl:118](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/math.jl#L118)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__xdmf_new_model.1" class="lexicon_definition"></a>
|
||||
#### xdmf_new_model() [¶](#method__xdmf_new_model.1)
|
||||
Build a new model for outout
|
||||
|
||||
Parameters
|
||||
----------
|
||||
|
||||
Example
|
||||
-------
|
||||
>>> xdmf_new_model()
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/xdmf.jl:48](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/xdmf.jl#L48)
|
||||
|
||||
---
|
||||
|
||||
<a id="method__xdmf_new_model.2" class="lexicon_definition"></a>
|
||||
#### xdmf_new_model(xdmf_version) [¶](#method__xdmf_new_model.2)
|
||||
Build a new model for outout
|
||||
|
||||
Parameters
|
||||
----------
|
||||
|
||||
Example
|
||||
-------
|
||||
>>> xdmf_new_model()
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/xdmf.jl:48](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/xdmf.jl#L48)
|
||||
|
||||
---
|
||||
|
||||
<a id="type__point1.1" class="lexicon_definition"></a>
|
||||
#### JuliaFEM.Point1 [¶](#type__point1.1)
|
||||
1 node point element
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:112](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L112)
|
||||
|
||||
---
|
||||
|
||||
<a id="type__quad4.1" class="lexicon_definition"></a>
|
||||
#### JuliaFEM.Quad4 [¶](#type__quad4.1)
|
||||
4 node bilinear quadrangle element
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:155](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L155)
|
||||
|
||||
---
|
||||
|
||||
<a id="type__seg2.1" class="lexicon_definition"></a>
|
||||
#### JuliaFEM.Seg2 [¶](#type__seg2.1)
|
||||
3 node quadratic line element
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:139](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L139)
|
||||
|
||||
---
|
||||
|
||||
<a id="type__tet10.1" class="lexicon_definition"></a>
|
||||
#### JuliaFEM.Tet10 [¶](#type__tet10.1)
|
||||
10 node quadratic tethahedron
|
||||
|
||||
|
||||
*source:*
|
||||
[JuliaFEM/src/elements.jl:195](https://github.com/JuliaFEM/JuliaFEM.jl/tree/33a7fe664e9808c57564b507f0b8d5dcb451365a/src/elements.jl#L195)
|
||||
|
||||
@@ -1,130 +0,0 @@
|
||||
JuliaFEM
|
||||
========
|
||||
|
||||
Exported
|
||||
--------
|
||||
|
||||
.. function:: get_coordinates(el::JuliaFEM.Element)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:29]
|
||||
|
||||
.. function:: integrate(f::Function)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:163]
|
||||
|
||||
.. function:: integrate(f::Function, el::JuliaFEM.Element)
|
||||
|
||||
Integrate f over element using Gaussian quadrature rules.
|
||||
|
||||
:param el: Element
|
||||
:param f: Function
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:143]
|
||||
|
||||
.. function:: interpolate(field::Float64, basis::Function, ip::Array{Float64, 1})
|
||||
|
||||
Interpolate field variable using basis functions f for point ip.
|
||||
This function tries to be as general as possible and allows interpolating
|
||||
lot of different fields.
|
||||
|
||||
:param field : Array{Number, dim}
|
||||
:param basis : Function
|
||||
:param ip : Array{Number, 1}
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:26]
|
||||
|
||||
.. function:: linearize(f::Function, el::JuliaFEM.Element, field::ASCIIString)
|
||||
|
||||
Linearize function f w.r.t some given field, i.e. calculate dR/du
|
||||
|
||||
:param f: Function
|
||||
:param field: ASCIIString
|
||||
:returns: Array{Float64, 2}
|
||||
jacobian / "tangent stiffness matrix"
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:85]
|
||||
|
||||
.. function:: linearize(f::Function, field::ASCIIString)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:100]
|
||||
|
||||
.. function:: set_coordinates(el::JuliaFEM.Element, coordinates)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:36]
|
||||
|
||||
Internal
|
||||
--------
|
||||
|
||||
.. function:: add_handler(section, function_name)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/abaqus_reader.jl:13]
|
||||
|
||||
.. function:: create_lagrange_element(element_name, X, P, dP)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:64]
|
||||
|
||||
.. function:: get_dbasisdX(el::JuliaFEM.Element, xi)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:20]
|
||||
|
||||
.. function:: get_element_id(el::JuliaFEM.Element)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:43]
|
||||
|
||||
.. function:: get_jacobian(el::JuliaFEM.Element, xi)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:9]
|
||||
|
||||
.. function:: integrate!(f::Function, el::JuliaFEM.Element, target)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:178]
|
||||
|
||||
.. function:: linearize!(f::Function, el::JuliaFEM.Element, field::ASCIIString, target::ASCIIString)
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/math.jl:118]
|
||||
|
||||
.. function:: xdmf_new_model()
|
||||
|
||||
Build a new model for outout
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/xdmf.jl:48]
|
||||
|
||||
.. function:: xdmf_new_model(xdmf_version)
|
||||
|
||||
Build a new model for outout
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/xdmf.jl:48]
|
||||
|
||||
.. function:: JuliaFEM.Point1
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:112]
|
||||
|
||||
.. function:: JuliaFEM.Quad4
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:155]
|
||||
|
||||
.. function:: JuliaFEM.Seg2
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:139]
|
||||
|
||||
.. function:: JuliaFEM.Tet10
|
||||
|
||||
**source**
|
||||
[JuliaFEM/src/elements.jl:195]
|
||||
|
||||
@@ -1,2 +0,0 @@
|
||||
# JuliaFEM.xdmf
|
||||
|
||||
@@ -1,3 +0,0 @@
|
||||
JuliaFEM.xdmf
|
||||
=============
|
||||
|
||||
@@ -1,14 +0,0 @@
|
||||
API Documentation
|
||||
=================
|
||||
|
||||
Automatically generated api documentation
|
||||
|
||||
|
||||
Contents:
|
||||
|
||||
.. toctree::
|
||||
:maxdepth: 3
|
||||
|
||||
JuliaFEM
|
||||
JuliaFEM.elasticity_solver
|
||||
JuliaFEM.interfaces
|
||||
-315
@@ -1,315 +0,0 @@
|
||||
# -*- coding: utf-8 -*-
|
||||
#
|
||||
# JuliaFEM documentation build configuration file, created by
|
||||
# sphinx-quickstart on Fri Jul 3 22:25:04 2015.
|
||||
#
|
||||
# This file is execfile()d with the current directory set to its
|
||||
# containing dir.
|
||||
#
|
||||
# Note that not all possible configuration values are present in this
|
||||
# autogenerated file.
|
||||
#
|
||||
# All configuration values have a default; values that are commented out
|
||||
# serve to show the default.
|
||||
|
||||
import sys
|
||||
import os
|
||||
import juliadoc
|
||||
import shlex
|
||||
import sphinx_rtd_theme
|
||||
import datetime
|
||||
|
||||
html_last_updated_fmt = "%Y-%m-%d %H:%M:%S"
|
||||
|
||||
extensions = [
|
||||
'sphinx.ext.autodoc',
|
||||
'sphinx.ext.doctest',
|
||||
'sphinx.ext.coverage',
|
||||
'sphinx.ext.viewcode',
|
||||
'juliadoc.julia',
|
||||
'juliadoc.jlhelp',
|
||||
'numpydoc']
|
||||
|
||||
html_theme_path = [
|
||||
juliadoc.get_theme_dir(),
|
||||
sphinx_rtd_theme.get_html_theme_path()]
|
||||
|
||||
html_sidebars = juliadoc.default_sidebars()
|
||||
|
||||
primary_domain = 'jl'
|
||||
highlight_language = 'julia'
|
||||
|
||||
# If extensions (or modules to document with autodoc) are in another directory,
|
||||
# add these directories to sys.path here. If the directory is relative to the
|
||||
# documentation root, use os.path.abspath to make it absolute, like shown here.
|
||||
#sys.path.insert(0, os.path.abspath('.'))
|
||||
|
||||
# -- General configuration ------------------------------------------------
|
||||
|
||||
# If your documentation needs a minimal Sphinx version, state it here.
|
||||
#needs_sphinx = '1.0'
|
||||
|
||||
# Add any Sphinx extension module names here, as strings. They can be
|
||||
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
|
||||
# ones.
|
||||
#extensions = []
|
||||
|
||||
# Add any paths that contain templates here, relative to this directory.
|
||||
templates_path = ['_templates']
|
||||
|
||||
# The suffix(es) of source filenames.
|
||||
# You can specify multiple suffix as a list of string:
|
||||
# source_suffix = ['.rst', '.md']
|
||||
source_suffix = ['.rst', '.md']
|
||||
|
||||
# The encoding of source files.
|
||||
#source_encoding = 'utf-8-sig'
|
||||
|
||||
# The master toctree document.
|
||||
master_doc = 'index'
|
||||
|
||||
# General information about the project.
|
||||
project = u'JuliaFEM'
|
||||
copyright = u'2015, Jukka Aho, Olli Väinölä, Tero Frondelius'
|
||||
author = u'Jukka Aho, Olli Väinölä, Tero Frondelius'
|
||||
|
||||
# The version info for the project you're documenting, acts as replacement for
|
||||
# |version| and |release|, also used in various other places throughout the
|
||||
# built documents.
|
||||
#
|
||||
# The short X.Y version.
|
||||
version = '0.0.1'
|
||||
# The full version, including alpha/beta/rc tags.
|
||||
release = '0.0.1'
|
||||
|
||||
# The language for content autogenerated by Sphinx. Refer to documentation
|
||||
# for a list of supported languages.
|
||||
#
|
||||
# This is also used if you do content translation via gettext catalogs.
|
||||
# Usually you set "language" from the command line for these cases.
|
||||
language = None
|
||||
|
||||
# There are two options for replacing |today|: either, you set today to some
|
||||
# non-false value, then it is used:
|
||||
#today = ''
|
||||
# Else, today_fmt is used as the format for a strftime call.
|
||||
#today_fmt = '%B %d, %Y'
|
||||
|
||||
# List of patterns, relative to source directory, that match files and
|
||||
# directories to ignore when looking for source files.
|
||||
exclude_patterns = ['_build']
|
||||
|
||||
# The reST default role (used for this markup: `text`) to use for all
|
||||
# documents.
|
||||
#default_role = None
|
||||
|
||||
# If true, '()' will be appended to :func: etc. cross-reference text.
|
||||
#add_function_parentheses = True
|
||||
|
||||
# If true, the current module name will be prepended to all description
|
||||
# unit titles (such as .. function::).
|
||||
#add_module_names = True
|
||||
|
||||
# If true, sectionauthor and moduleauthor directives will be shown in the
|
||||
# output. They are ignored by default.
|
||||
#show_authors = False
|
||||
|
||||
# The name of the Pygments (syntax highlighting) style to use.
|
||||
pygments_style = 'sphinx'
|
||||
|
||||
# A list of ignored prefixes for module index sorting.
|
||||
#modindex_common_prefix = []
|
||||
|
||||
# If true, keep warnings as "system message" paragraphs in the built documents.
|
||||
#keep_warnings = False
|
||||
|
||||
# If true, `todo` and `todoList` produce output, else they produce nothing.
|
||||
todo_include_todos = False
|
||||
|
||||
|
||||
# -- Options for HTML output ----------------------------------------------
|
||||
|
||||
# The theme to use for HTML and HTML Help pages. See the documentation for
|
||||
# a list of builtin themes.
|
||||
# html_theme = 'alabaster'
|
||||
html_theme = 'sphinx_rtd_theme'
|
||||
|
||||
|
||||
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
|
||||
html_show_sphinx = False
|
||||
|
||||
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
|
||||
html_show_copyright = False
|
||||
|
||||
# Theme options are theme-specific and customize the look and feel of a theme
|
||||
# further. For a list of options available for each theme, see the
|
||||
# documentation.
|
||||
#html_theme_options = {}
|
||||
|
||||
# Add any paths that contain custom themes here, relative to this directory.
|
||||
#html_theme_path = []
|
||||
|
||||
# The name for this set of Sphinx documents. If None, it defaults to
|
||||
# "<project> v<release> documentation".
|
||||
html_title = "JuliaFEM - A Finite Element Method Solver"
|
||||
|
||||
# A shorter title for the navigation bar. Default is the same as html_title.
|
||||
html_short_title = "JuliaFEM"
|
||||
|
||||
# The name of an image file (relative to this directory) to place at the top
|
||||
# of the sidebar.
|
||||
html_logo = 'logo/JuliaFEMLogo_96x96.png'
|
||||
|
||||
# The name of an image file (within the static path) to use as favicon of the
|
||||
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
|
||||
# pixels large.
|
||||
html_favicon = 'logo/JuliaFEMLogo_32x32.png'
|
||||
|
||||
# Add any paths that contain custom static files (such as style sheets) here,
|
||||
# relative to this directory. They are copied after the builtin static files,
|
||||
# so a file named "default.css" will overwrite the builtin "default.css".
|
||||
html_static_path = ['_static', 'badges']
|
||||
|
||||
# Add any extra paths that contain custom files (such as robots.txt or
|
||||
# .htaccess) here, relative to this directory. These files are copied
|
||||
# directly to the root of the documentation.
|
||||
#html_extra_path = []
|
||||
|
||||
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
|
||||
# using the given strftime format.
|
||||
#html_last_updated_fmt = '%b %d, %Y'
|
||||
|
||||
# If true, SmartyPants will be used to convert quotes and dashes to
|
||||
# typographically correct entities.
|
||||
#html_use_smartypants = True
|
||||
|
||||
# Custom sidebar templates, maps document names to template names.
|
||||
#html_sidebars = {}
|
||||
|
||||
# Additional templates that should be rendered to pages, maps page names to
|
||||
# template names.
|
||||
#html_additional_pages = {}
|
||||
|
||||
# If false, no module index is generated.
|
||||
#html_domain_indices = True
|
||||
|
||||
# If false, no index is generated.
|
||||
#html_use_index = True
|
||||
|
||||
# If true, the index is split into individual pages for each letter.
|
||||
#html_split_index = False
|
||||
|
||||
# If true, links to the reST sources are added to the pages.
|
||||
#html_show_sourcelink = True
|
||||
|
||||
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
|
||||
html_show_sphinx = False
|
||||
|
||||
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
|
||||
#html_show_copyright = True
|
||||
|
||||
# If true, an OpenSearch description file will be output, and all pages will
|
||||
# contain a <link> tag referring to it. The value of this option must be the
|
||||
# base URL from which the finished HTML is served.
|
||||
#html_use_opensearch = ''
|
||||
|
||||
# This is the file name suffix for HTML files (e.g. ".xhtml").
|
||||
#html_file_suffix = None
|
||||
|
||||
# Language to be used for generating the HTML full-text search index.
|
||||
# Sphinx supports the following languages:
|
||||
# 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
|
||||
# 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr'
|
||||
html_search_language = 'en'
|
||||
|
||||
# A dictionary with options for the search language support, empty by default.
|
||||
# Now only 'ja' uses this config value
|
||||
#html_search_options = {'type': 'default'}
|
||||
|
||||
# The name of a javascript file (relative to the configuration directory) that
|
||||
# implements a search results scorer. If empty, the default will be used.
|
||||
#html_search_scorer = 'scorer.js'
|
||||
|
||||
# Output file base name for HTML help builder.
|
||||
htmlhelp_basename = 'JuliaFEMdoc'
|
||||
|
||||
# -- Options for LaTeX output ---------------------------------------------
|
||||
|
||||
latex_elements = {
|
||||
# The paper size ('letterpaper' or 'a4paper').
|
||||
#'papersize': 'letterpaper',
|
||||
|
||||
# The font size ('10pt', '11pt' or '12pt').
|
||||
#'pointsize': '10pt',
|
||||
|
||||
# Additional stuff for the LaTeX preamble.
|
||||
#'preamble': '',
|
||||
|
||||
# Latex figure (float) alignment
|
||||
#'figure_align': 'htbp',
|
||||
}
|
||||
|
||||
# Grouping the document tree into LaTeX files. List of tuples
|
||||
# (source start file, target name, title,
|
||||
# author, documentclass [howto, manual, or own class]).
|
||||
latex_documents = [
|
||||
(master_doc, 'JuliaFEM.tex', u'JuliaFEM Documentation',
|
||||
u'Jukka Aho, Olli Väinölä, Tero Frondelius', 'manual'),
|
||||
]
|
||||
|
||||
# The name of an image file (relative to this directory) to place at the top of
|
||||
# the title page.
|
||||
#latex_logo = None
|
||||
|
||||
# For "manual" documents, if this is true, then toplevel headings are parts,
|
||||
# not chapters.
|
||||
#latex_use_parts = False
|
||||
|
||||
# If true, show page references after internal links.
|
||||
#latex_show_pagerefs = False
|
||||
|
||||
# If true, show URL addresses after external links.
|
||||
#latex_show_urls = False
|
||||
|
||||
# Documents to append as an appendix to all manuals.
|
||||
#latex_appendices = []
|
||||
|
||||
# If false, no module index is generated.
|
||||
#latex_domain_indices = True
|
||||
|
||||
|
||||
# -- Options for manual page output ---------------------------------------
|
||||
|
||||
# One entry per manual page. List of tuples
|
||||
# (source start file, name, description, authors, manual section).
|
||||
man_pages = [
|
||||
(master_doc, 'juliafem', u'JuliaFEM Documentation',
|
||||
[author], 1)
|
||||
]
|
||||
|
||||
# If true, show URL addresses after external links.
|
||||
#man_show_urls = False
|
||||
|
||||
|
||||
# -- Options for Texinfo output -------------------------------------------
|
||||
|
||||
# Grouping the document tree into Texinfo files. List of tuples
|
||||
# (source start file, target name, title, author,
|
||||
# dir menu entry, description, category)
|
||||
texinfo_documents = [
|
||||
(master_doc, 'JuliaFEM', u'JuliaFEM Documentation',
|
||||
author, 'JuliaFEM', 'One line description of project.',
|
||||
'Miscellaneous'),
|
||||
]
|
||||
|
||||
# Documents to append as an appendix to all manuals.
|
||||
#texinfo_appendices = []
|
||||
|
||||
# If false, no module index is generated.
|
||||
#texinfo_domain_indices = True
|
||||
|
||||
# How to display URL addresses: 'footnote', 'no', or 'inline'.
|
||||
#texinfo_show_urls = 'footnote'
|
||||
|
||||
# If true, do not generate a @detailmenu in the "Top" node's menu.
|
||||
#texinfo_no_detailmenu = False
|
||||
@@ -1,10 +0,0 @@
|
||||
.. include:: ../README.rst
|
||||
|
||||
.. toctree::
|
||||
:hidden:
|
||||
|
||||
self
|
||||
tutorials/index
|
||||
api/index
|
||||
quality/index
|
||||
../CONTRIBUTING.rst
|
||||
@@ -1,6 +0,0 @@
|
||||
============
|
||||
Introduction
|
||||
============
|
||||
|
||||
This is JuliaFEM.
|
||||
|
||||
@@ -1 +0,0 @@
|
||||
Documentation last updated (UTC): UNKNOWN
|
||||
@@ -1,22 +0,0 @@
|
||||
Discretization
|
||||
==============
|
||||
|
||||
http://code.activestate.com/recipes/579021-delaunay-triangulation/
|
||||
|
||||
|
||||
Interpolation
|
||||
=============
|
||||
|
||||
- http://www.cs.rpi.edu/~flaherje/pdf/fea4.pdf
|
||||
- http://www.sd.ruhr-uni-bochum.de/downloads/Shape_funct.pdf
|
||||
- http://what-when-how.com/the-finite-element-method/fem-for-3d-solids-finite-element-method-part-1/
|
||||
- http://www.uni-tuebingen.de/zag/teaching/environmental_modeling/S4B_FiniteElements.pdf
|
||||
- http://www.colorado.edu/engineering/CAS/courses.d/AFEM.d/AFEM.Ch10.d/AFEM.Ch10.pdf
|
||||
- http://www.colorado.edu/engineering/CAS/courses.d/AFEM.d/AFEM.Ch10.d/AFEM.Ch10.Slides.d/AFEM.Ch10.Slides.pdf
|
||||
- http://www.colorado.edu/engineering/CAS/courses.d/AFEM.d/AFEM.AppI.d/AFEM.AppI.pdf
|
||||
- http://www.code-aster.org/V2/doc/default/en/man_r/r3/r3.01.01.pdf
|
||||
- http://www.researchgate.net/publication/267082822_Unified_isoparametric_3D_Lagrange_finite_elements
|
||||
|
||||
Integration
|
||||
===========
|
||||
- http://arxiv.org/pdf/1411.1341.pdf
|
||||
@@ -1,2 +0,0 @@
|
||||
This is placeholder file doc doctest results. If you see this file then doctests has not been run.
|
||||
|
||||
@@ -1,18 +0,0 @@
|
||||
Code quality
|
||||
============
|
||||
|
||||
Lint report
|
||||
-----------
|
||||
|
||||
.. include:: lint_report.rst
|
||||
|
||||
Doctest report
|
||||
--------------
|
||||
|
||||
.. include:: doctests_report.rst
|
||||
|
||||
Unittest report
|
||||
---------------
|
||||
|
||||
.. include:: unittests_report.rst
|
||||
|
||||
@@ -1,24 +0,0 @@
|
||||
| JuliaFEM/src/abaqus_reader.jl:7 [ ] ERROR Use of undeclared symbol level
|
||||
| JuliaFEM/src/abaqus_reader.jl:34 [parse_header ] ERROR Use of undeclared symbol end
|
||||
| JuliaFEM/src/abaqus_reader.jl:47 [parse_node_section] ERROR Use of undeclared symbol end
|
||||
| JuliaFEM/src/abaqus_reader.jl:65 [parse_element_section] ERROR Use of undeclared symbol end
|
||||
| JuliaFEM/src/abaqus_reader.jl:42 [parse_node_section] INFO Argument declared but not used: header
|
||||
| JuliaFEM/src/abaqus_reader.jl:99 [process_section] INFO Argument declared but not used: section
|
||||
| JuliaFEM/src/elasticity_solver.jl:7 [ ] ERROR Use of undeclared symbol level
|
||||
| JuliaFEM/src/elasticity_solver.jl:71 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:72 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:78 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:94 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:98 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:99 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:105 [calc_local_matrices!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:301 [solve_elasticity_increment!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/elasticity_solver.jl:302 [solve_elasticity_increment!] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/interfaces.jl:7 [ ] ERROR Use of undeclared symbol level
|
||||
| JuliaFEM/src/xdmf.jl:7 [ ] ERROR Use of undeclared symbol level
|
||||
| JuliaFEM/src/xdmf.jl:97 [xdmf_new_mesh ] ERROR Use of undeclared symbol :
|
||||
| JuliaFEM/src/xdmf.jl:97 [xdmf_new_mesh ] ERROR Use of undeclared symbol end
|
||||
| JuliaFEM/src/xdmf.jl:102 [xdmf_new_field ] INFO There is only 1 key type && 1 value type. Use explicit Dict{K,V}() for better performances.
|
||||
| JuliaFEM/src/xdmf.jl:127 [xdmf_new_field ] INFO attribute is also a global, from
|
||||
|
||||
Please check.
|
||||
@@ -1,2 +0,0 @@
|
||||
This is placeholder for unittests. This should be replaced with real report when testing.
|
||||
|
||||
@@ -1 +0,0 @@
|
||||
-e git+https://github.com/JuliaLang/JuliaDoc.git#egg=Julia
|
||||
@@ -1,6 +0,0 @@
|
||||
src
|
||||
===
|
||||
|
||||
.. toctree::
|
||||
:maxdepth: 4
|
||||
|
||||
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